PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS60227.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family WOX
Protein Properties Length: 71aa    MW: 8726.06 Da    PI: 11.7243
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS60227.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.15.3e-22463357
                --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                +R+++t+eql+ Lee+++   r+psae+++++ +kl    +++ ++V++WFqN++a+ek+
  EPS60227.1  4 TRWSPTPEQLQSLEEMYRHgVRTPSAEQIQQIVAKLrrfgRIEGKNVFYWFQNHKAREKQ 63
                8*****************99**************************************97 PP

2Wus_type_Homeobox116.21.5e-37365365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +tRW+PtpeQ++ Lee+y++G+rtP++e+iq+i a+L+++G+ie+kNVfyWFQN+kaRe+q++
         EPS60227.1  3 STRWSPTPEQLQSLEEMYRHGVRTPSAEQIQQIVAKLRRFGRIEGKNVFYWFQNHKAREKQRK 65
                       79***********************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.224164IPR001356Homeobox domain
SMARTSM003891.1E-5168IPR001356Homeobox domain
PfamPF000461.2E-19463IPR001356Homeobox domain
SuperFamilySSF466892.1E-13467IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-10463IPR009057Homeodomain-like
PROSITE patternPS0061601327IPR033379Histidine acid phosphatase active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
LMSTRWSPTP EQLQSLEEMY RHGVRTPSAE QIQQIVAKLR RFGRIEGKNV FYWFQNHKAR  60
EKQRKRRRLE L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16367RKRRR
26468KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844100.12e-37PREDICTED: WUSCHEL-related homeobox 6-like
SwissprotQ6X7K02e-33WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBLS8DL223e-46S8DL22_9LAMI; Uncharacterized protein (Fragment)
STRINGGLYMA05G33850.27e-33(Glycine max)
STRINGGLYMA08G05831.11e-33(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46812342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.12e-29WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]